MRIQC: individual T1w report

Summary

Subject ID: 040_ControlPre.
Date and time: 2018-05-07, 00:58.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3862355186508157
cnr			3.3193948991002586
efc			0.6260543190469744
fber			65.04811096191406
fwhm	avg		3.6985033333333335
fwhm	x		3.57575
fwhm	y		3.86707
fwhm	z		3.65269
icvs	csf		0.21807430694609486
icvs	gm		0.43138020966173174
icvs	wm		0.3505454833921734
inu	med		1.1985971927642822
inu	range		0.35154956579208374
qi	1		4.612339457641592e-06
qi	2		0.001466303951164481
rpve	csf		21.65686436202248
rpve	gm		11.46574196406674
rpve	wm		16.506808387583668
size	x		180
size	y		256
size	z		256
snr	csf		2.618317791932877
snr	gm		9.785909663256257
snr	total		9.032017469377164
snr	wm		14.691824952942357
snrd	csf		8.945614083772512
snrd	gm		19.479450034760777
snrd	total		19.28699760711292
snrd	wm		29.435928702805466
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	4.052857201136999
summary	bg	mad	22.257125854492188
summary	bg	mean	71.6534194946289
summary	bg	median	61.92546081542969
summary	bg	n	2808935.0
summary	bg	p05	36.04483337402344
summary	bg	p95	143.476545715332
summary	bg	stdv	34.31979751586914
summary	csf	k	0.4729682450341248
summary	csf	mad	117.65863800048828
summary	csf	mean	313.23052978515625
summary	csf	median	303.9117736816406
summary	csf	n	22597.0
summary	csf	p05	139.5375946044922
summary	csf	p95	513.1640014648438
summary	csf	stdv	116.06881713867188
summary	gm	k	0.1564395662993725
summary	gm	mad	66.26676940917969
summary	gm	mean	663.59326171875
summary	gm	median	661.7806396484375
summary	gm	n	26888.0
summary	gm	p05	555.6552154541016
summary	gm	p95	777.821661376953
summary	gm	stdv	67.6246109008789
summary	wm	k	0.6966128410445087
summary	wm	mad	64.37899780273438
summary	wm	mean	1003.0620727539062
summary	wm	median	1000.0347900390625
summary	wm	n	208506.0
summary	wm	p05	897.1363220214844
summary	wm	p95	1119.6889953613281
summary	wm	stdv	68.06726837158203
tpm	overlap	csf	0.20725850760936737
tpm	overlap	gm	0.5159141421318054
tpm	overlap	wm	0.550724983215332
wm2max			0.6170050218438669

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	43bbd93270c5330415ef0de11df40f91
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.