MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3862355186508157
cnr3.3193948991002586
efc0.6260543190469744
fber65.04811096191406
fwhmavg3.6985033333333335
fwhmx3.57575
fwhmy3.86707
fwhmz3.65269
icvscsf0.21807430694609486
icvsgm0.43138020966173174
icvswm0.3505454833921734
inumed1.1985971927642822
inurange0.35154956579208374
qi14.612339457641592e-06
qi20.001466303951164481
rpvecsf21.65686436202248
rpvegm11.46574196406674
rpvewm16.506808387583668
sizex180
sizey256
sizez256
snrcsf2.618317791932877
snrgm9.785909663256257
snrtotal9.032017469377164
snrwm14.691824952942357
snrdcsf8.945614083772512
snrdgm19.479450034760777
snrdtotal19.28699760711292
snrdwm29.435928702805466
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk4.052857201136999
summarybgmad22.257125854492188
summarybgmean71.6534194946289
summarybgmedian61.92546081542969
summarybgn2808935.0
summarybgp0536.04483337402344
summarybgp95143.476545715332
summarybgstdv34.31979751586914
summarycsfk0.4729682450341248
summarycsfmad117.65863800048828
summarycsfmean313.23052978515625
summarycsfmedian303.9117736816406
summarycsfn22597.0
summarycsfp05139.5375946044922
summarycsfp95513.1640014648438
summarycsfstdv116.06881713867188
summarygmk0.1564395662993725
summarygmmad66.26676940917969
summarygmmean663.59326171875
summarygmmedian661.7806396484375
summarygmn26888.0
summarygmp05555.6552154541016
summarygmp95777.821661376953
summarygmstdv67.6246109008789
summarywmk0.6966128410445087
summarywmmad64.37899780273438
summarywmmean1003.0620727539062
summarywmmedian1000.0347900390625
summarywmn208506.0
summarywmp05897.1363220214844
summarywmp951119.6889953613281
summarywmstdv68.06726837158203
tpmoverlapcsf0.20725850760936737
tpmoverlapgm0.5159141421318054
tpmoverlapwm0.550724983215332
wm2max0.6170050218438669

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum43bbd93270c5330415ef0de11df40f91
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.